Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau.
Identifieur interne : 000490 ( Main/Exploration ); précédent : 000489; suivant : 000491Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau.
Auteurs : Mengjun Zhang [République populaire de Chine] ; Liwei Chai [République populaire de Chine] ; Muke Huang [République populaire de Chine] ; Weiqian Jia [République populaire de Chine] ; Jiabao Guo [République populaire de Chine] ; Yi Huang [République populaire de Chine]Source :
- BMC microbiology [ 1471-2180 ] ; 2020.
Abstract
BACKGROUND
The Qinghai-Tibetan Plateau represents one of the most important component of the terrestrial ecosystem and a particularly vulnerable region, which harbouring complex and diverse microbiota. The knowledge about their underground microorganisms have largely been studied, but the characteristics of rhizosphere microbiota, particularly archaeal communities remains unclear.
RESULTS
High-throughput Illumina sequencing was used to investigate the rhizosphere archaeal communities of two native alpine trees (Picea crassifolia and Populus szechuanica) living on the Qinghai-Tibetan Plateau. The archaeal community structure in rhizospheres significantly differed from that in bulk soil. Thaumarchaeota was the dominant archaeal phylum in all soils tested (92.46-98.01%), while its relative abundance in rhizospheres were significantly higher than that in bulk soil. Ammonium nitrogen, soil organic matter, available phosphorus and pH were significantly correlated with the archaeal community structure, and the deterministic processes dominated the assembly of archaeal communities across all soils. In addition, the network structures of the archaeal community in the rhizosphere were less complex than they were in the bulk soil, and an unclassified archaeal group (Unclassified_k_norank) was identified as the keystone species in all archaeal networks.
CONCLUSIONS
Overall, the structure, assembly and co-occurrence patterns of archaeal communities are significantly affected by the presence of roots of alpine trees living on the Qinghai-Tibetan Plateau. This study provides new insights into our understanding of archaeal communities in vulnerable ecosystems.
DOI: 10.1186/s12866-020-01913-5
PubMed: 32738877
PubMed Central: PMC7395985
Affiliations:
Links toward previous steps (curation, corpus...)
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China, 10087.</nlm:affiliation><orgName type="university">Université de Pékin</orgName><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Chai, Liwei" sort="Chai, Liwei" uniqKey="Chai L" first="Liwei" last="Chai">Liwei Chai</name><affiliation wicri:level="4"><nlm:affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</nlm:affiliation><orgName type="university">Université de Pékin</orgName><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Huang, Muke" sort="Huang, Muke" uniqKey="Huang M" first="Muke" last="Huang">Muke Huang</name><affiliation wicri:level="4"><nlm:affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</nlm:affiliation><orgName type="university">Université de Pékin</orgName><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Jia, Weiqian" sort="Jia, Weiqian" uniqKey="Jia W" first="Weiqian" last="Jia">Weiqian Jia</name><affiliation wicri:level="4"><nlm:affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</nlm:affiliation><orgName type="university">Université de Pékin</orgName><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Guo, Jiabao" sort="Guo, Jiabao" uniqKey="Guo J" first="Jiabao" last="Guo">Jiabao Guo</name><affiliation wicri:level="4"><nlm:affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</nlm:affiliation><orgName type="university">Université de Pékin</orgName><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Huang, Yi" sort="Huang, Yi" uniqKey="Huang Y" first="Yi" last="Huang">Yi Huang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087. yhuang@pku.edu.cn.</nlm:affiliation><country wicri:rule="url">République populaire de Chine</country></affiliation></author></analytic><series><title level="j">BMC microbiology</title><idno type="eISSN">1471-2180</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The Qinghai-Tibetan Plateau represents one of the most important component of the terrestrial ecosystem and a particularly vulnerable region, which harbouring complex and diverse microbiota. The knowledge about their underground microorganisms have largely been studied, but the characteristics of rhizosphere microbiota, particularly archaeal communities remains unclear.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>High-throughput Illumina sequencing was used to investigate the rhizosphere archaeal communities of two native alpine trees (Picea crassifolia and Populus szechuanica) living on the Qinghai-Tibetan Plateau. The archaeal community structure in rhizospheres significantly differed from that in bulk soil. Thaumarchaeota was the dominant archaeal phylum in all soils tested (92.46-98.01%), while its relative abundance in rhizospheres were significantly higher than that in bulk soil. Ammonium nitrogen, soil organic matter, available phosphorus and pH were significantly correlated with the archaeal community structure, and the deterministic processes dominated the assembly of archaeal communities across all soils. In addition, the network structures of the archaeal community in the rhizosphere were less complex than they were in the bulk soil, and an unclassified archaeal group (Unclassified_k_norank) was identified as the keystone species in all archaeal networks.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>Overall, the structure, assembly and co-occurrence patterns of archaeal communities are significantly affected by the presence of roots of alpine trees living on the Qinghai-Tibetan Plateau. This study provides new insights into our understanding of archaeal communities in vulnerable ecosystems.</p></div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">32738877</PMID><DateRevised><Year>2020</Year><Month>08</Month><Day>07</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2180</ISSN><JournalIssue CitedMedium="Internet"><Volume>20</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>Aug</Month><Day>01</Day></PubDate></JournalIssue><Title>BMC microbiology</Title><ISOAbbreviation>BMC Microbiol</ISOAbbreviation></Journal><ArticleTitle>Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau.</ArticleTitle><Pagination><MedlinePgn>235</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12866-020-01913-5</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The Qinghai-Tibetan Plateau represents one of the most important component of the terrestrial ecosystem and a particularly vulnerable region, which harbouring complex and diverse microbiota. The knowledge about their underground microorganisms have largely been studied, but the characteristics of rhizosphere microbiota, particularly archaeal communities remains unclear.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">High-throughput Illumina sequencing was used to investigate the rhizosphere archaeal communities of two native alpine trees (Picea crassifolia and Populus szechuanica) living on the Qinghai-Tibetan Plateau. The archaeal community structure in rhizospheres significantly differed from that in bulk soil. Thaumarchaeota was the dominant archaeal phylum in all soils tested (92.46-98.01%), while its relative abundance in rhizospheres were significantly higher than that in bulk soil. Ammonium nitrogen, soil organic matter, available phosphorus and pH were significantly correlated with the archaeal community structure, and the deterministic processes dominated the assembly of archaeal communities across all soils. In addition, the network structures of the archaeal community in the rhizosphere were less complex than they were in the bulk soil, and an unclassified archaeal group (Unclassified_k_norank) was identified as the keystone species in all archaeal networks.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Overall, the structure, assembly and co-occurrence patterns of archaeal communities are significantly affected by the presence of roots of alpine trees living on the Qinghai-Tibetan Plateau. This study provides new insights into our understanding of archaeal communities in vulnerable ecosystems.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Mengjun</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chai</LastName><ForeName>Liwei</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Muke</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jia</LastName><ForeName>Weiqian</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Jiabao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Yi</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Science and Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, P.R. China, 10087. yhuang@pku.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>2017YFC0506804</GrantID><Agency>the National Key Research and Development Program of China</Agency><Country></Country></Grant><Grant><GrantID>18Y01ESTCT</GrantID><Agency>the State Key Joint Laboratory of Environmental Simulation and Pollution Control</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Microbiol</MedlineTA><NlmUniqueID>100966981</NlmUniqueID><ISSNLinking>1471-2180</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Archaeal community</Keyword><Keyword MajorTopicYN="N">Assembly process</Keyword><Keyword MajorTopicYN="N">Co-occurrence</Keyword><Keyword MajorTopicYN="N">Qinghai-Tibetan plateau</Keyword><Keyword MajorTopicYN="N">Rhizosphere</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>06</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>07</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>8</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>8</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>8</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32738877</ArticleId><ArticleId IdType="doi">10.1186/s12866-020-01913-5</ArticleId><ArticleId 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last="Guo">Jiabao Guo</name><name sortKey="Huang, Muke" sort="Huang, Muke" uniqKey="Huang M" first="Muke" last="Huang">Muke Huang</name><name sortKey="Huang, Yi" sort="Huang, Yi" uniqKey="Huang Y" first="Yi" last="Huang">Yi Huang</name><name sortKey="Jia, Weiqian" sort="Jia, Weiqian" uniqKey="Jia W" first="Weiqian" last="Jia">Weiqian Jia</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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